Difference between revisions of "Bioinformatics and Scientific Computing Facility"

From BioWiki
Jump to navigationJump to search
Line 12: Line 12:
  
 
'''Pertinent hardware info:''' We have access to our own HPC resources in house:
 
'''Pertinent hardware info:''' We have access to our own HPC resources in house:
'''''Cluster Overview'''''
+
*'''''Cluster Overview'''''
*No. of Physical nodes 44
+
**No. of Physical nodes 44
*CPU Intel Xeon E5-2640 @ 2.50 GHz
+
**CPU Intel Xeon E5-2640 @ 2.50 GHz
*Memory Size 128GB
+
**Memory Size 128GB
*No. of Physical CPUs in a node 2
+
**No. of Physical CPUs in a node 2
*No. of Cores in a node 12 (2 x hexacores)
+
**No. of Cores in a node 12 (2 x hexacores)
*Total No. of Cores 480  
+
**Total No. of Cores 480  
  
 
'''Training:''' We are a member of the software carpentry project and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
 
'''Training:''' We are a member of the software carpentry project and offer training using this material.  We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor
  
 
'''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services
 
'''Bioinformatics support model:''' We are open to internal and external customers and recharge for our services

Revision as of 01:35, 16 April 2015

Location: Dresden, Germany

Name/Title: MPI-CBG Scientific Computing Facility (Bioinformatics, Scientific Software Development, BioImage Informatics)

Links:

Group size: We are seven people (1x Facility Leader, 2x bioinformaticians, 2x software developers and 2x BioImage Informaticians)

Environment: Academic Research Environment

Pertinent hardware info: We have access to our own HPC resources in house:

  • Cluster Overview
    • No. of Physical nodes 44
    • CPU Intel Xeon E5-2640 @ 2.50 GHz
    • Memory Size 128GB
    • No. of Physical CPUs in a node 2
    • No. of Cores in a node 12 (2 x hexacores)
    • Total No. of Cores 480

Training: We are a member of the software carpentry project and offer training using this material. We also offer training in image analysis with Fiji/ImageJ and biological data analysis using R/Bioconductor

Bioinformatics support model: We are open to internal and external customers and recharge for our services