MediaWiki API result
This is the HTML representation of the JSON format. HTML is good for debugging, but is unsuitable for application use.
Specify the format parameter to change the output format. To see the non-HTML representation of the JSON format, set format=json.
See the complete documentation, or the API help for more information.
{
"compare": {
"fromid": 1482,
"fromrevid": 1,
"fromns": 0,
"fromtitle": "Main Page",
"toid": 2,
"torevid": 2,
"tons": 4,
"totitle": "BioWiki:Community Portal",
"*": "<tr><td colspan=\"2\" class=\"diff-lineno\" id=\"mw-diff-left-l1\" >Line 1:</td>\n<td colspan=\"2\" class=\"diff-lineno\">Line 1:</td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><<del class=\"diffchange diffchange-inline\">big</del>><del class=\"diffchange diffchange-inline\">'''MediaWiki has been successfully installed.'''</del></<del class=\"diffchange diffchange-inline\">big</del>></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><<ins class=\"diffchange diffchange-inline\">h1</ins>><ins class=\"diffchange diffchange-inline\">Ongoing Discussion for Bioinformatics Core Facilities</ins></<ins class=\"diffchange diffchange-inline\">h1</ins>></div></td></tr>\n<tr><td class='diff-marker'>\u00a0</td><td class='diff-context'></td><td class='diff-marker'>\u00a0</td><td class='diff-context'></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">Consult </del>the <del class=\"diffchange diffchange-inline\">[</del>http://<del class=\"diffchange diffchange-inline\">meta</del>.<del class=\"diffchange diffchange-inline\">wikimedia</del>.org/wiki/<del class=\"diffchange diffchange-inline\">Help</del>:<del class=\"diffchange diffchange-inline\">Contents User's Guide] </del>for <del class=\"diffchange diffchange-inline\">information </del>on using <del class=\"diffchange diffchange-inline\">the wiki software</del>.</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">Please enter information about your core facility on </ins>the <ins class=\"diffchange diffchange-inline\"><a href="</ins>http://<ins class=\"diffchange diffchange-inline\">www</ins>.<ins class=\"diffchange diffchange-inline\">bioinfo-core</ins>.org<ins class=\"diffchange diffchange-inline\">">Bioinfo-core main page<</ins>/<ins class=\"diffchange diffchange-inline\">a>.\u00a0 </ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><br><br></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">To get started, create a New Account and then edit the main page to add a link for your core facility.\u00a0 To create a new page, edit the page from which you'd like to link to</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">the new page and add a new </ins>wiki <ins class=\"diffchange diffchange-inline\">tag (the new page name enclosed in square brackets) for the new page.\u00a0 Hit save, then</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">the tag you added will display as underlined with a question mark next to it.\u00a0 Click the question mark to create that page.\u00a0 Save that page and you should be all set.</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><br><br></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><hr></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h2>Tools popular with biologists</h2></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><br>This is a list of the tools that were mentioned in our discussion on "bioinformatics for the biologists" on Feb 4th, 2008.</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><br><br></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h3>Microarray data retrieval and basic analysis</h3></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://base.thep.lu.se">BASE</a> from Lund University, Sweden (basic analysis and database)</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://www.tm4.org/">Multiple Experiment Viewer from Quackenbush Group at Harvard Univ </a></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://bioinformatics.skcc.org/webarray/"> WebArray: Web interface, based on bioconductor and mySQL </a></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="https://carmaweb.genome.tugraz.at/carma">CarmaWeb <</ins>/<ins class=\"diffchange diffchange-inline\">a></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http</ins>:<ins class=\"diffchange diffchange-inline\">//www.bioinformatics.bbsrc.ac.uk/projects/chipmonk/">ChipMonk</a> </ins>for <ins class=\"diffchange diffchange-inline\">ChIP-</ins>on<ins class=\"diffchange diffchange-inline\">-chip data, e.g. from Nimblegen</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://biosun1.harvard.edu/complab/dchip/">DChip</A>: basic analysis (e.g. get a list of differentially expressed genes)</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://bioinfo.bgu.ac.il/bsu/microarrays/links/">A good links site</A> for multiple applications</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"></ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h3>Structure visualization and basic analysis</h3></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://pymol.sourceforge.net/">PyMOL</A></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li>AutoDock for docking</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li>DiscoveryStudio (?)</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://kinemage.biochem.duke.edu">Kinmage</a> for 3D Macromolecule analysis from Richardson Lab at Duke</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://swissmodel.expasy.org/spdbv/">DeepView</a> for structure analysis and modeling from the Swiss Institute of Bioinformatics and GlaxoSmithKline R&D</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><a href="http://www.ncbi.nlm.nih.gov/Structure/CN3D/cn3d.shtml">Cn3D</a> for structure veiwer from NCBI</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"></ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h3>Visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data</h3></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://cytoscape.org/">Cytoscape</A></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://reactome.org/">Reactome</A> including <A HREF="http://www.reactome.org/cgi-bin/skypainter2?DB=gk_current">Skypainter</A> and the latest biomart interface <A HREF="http://brie8.cshl.org/cgi-bin/mart">Reactome Mart</A></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://www.bioinformatics.ed.ac.uk/epe/">EPE</A> Edinburgh Pathway Editor</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"></ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h3>Pipeline Tools</h3></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><ul></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li><A HREF="http://taverna.sourceforge.net/">Tavera</a> Best uses in conjunction with in-house web services to ensure reliability. Most command line applications can be converted to a web service </ins>using <ins class=\"diffchange diffchange-inline\"><A HREF="http://wwww.ebi.ac.uk/soaplab/">Soaplab</A>. Version 2 of taverna should handle large file sizes a lot better.</ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><li> <A HREF="http://www.biomedcentral.com/1471-2105/8/208">Alternatives:</a> A paper highlighting Seahawk (<A HREF="http://biomoby</ins>.<ins class=\"diffchange diffchange-inline\">org/">Biomoby</A>) but also mentions both Taverna and Remora </ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"></ul></ins></div></td></tr>\n<tr><td class='diff-marker'>\u00a0</td><td class='diff-context'></td><td class='diff-marker'>\u00a0</td><td class='diff-context'></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">== Getting started ==</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><hr></ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div>\u00a0</div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><h3>Looking for collaborations in Rosetta Resolver training</h3></ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [http://www</del>.<del class=\"diffchange diffchange-inline\">mediawiki</del>.<del class=\"diffchange diffchange-inline\">org/wiki/Manual:Configuration_settings Configuration settings list]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">The National Institute of Biotechnology is experimenting with Rosetta in setting up a national test-bed for bioinformatics software. As a part of this collaboration, we are trying to develop a training strategy that would allow researchers, both industry and academia, figure out the value of Resolver for their research with minimal training</ins>.<ins class=\"diffchange diffchange-inline\"><p></ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [http</del>:<del class=\"diffchange diffchange-inline\">//www</del>.<del class=\"diffchange diffchange-inline\">mediawiki</del>.<del class=\"diffchange diffchange-inline\">org/wiki/Manual:FAQ MediaWiki FAQ]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">We are looking for someone interested in developing together training material for people who understand microarray analysis, at least the basics of it, and wish to get rapidly started with Resolver</ins>.<ins class=\"diffchange diffchange-inline\"><p></ins></div></td></tr>\n<tr><td class='diff-marker'>\u2212</td><td class='diff-deletedline'><div><del class=\"diffchange diffchange-inline\">* [http://lists</del>.<del class=\"diffchange diffchange-inline\">wikimedia</del>.<del class=\"diffchange diffchange-inline\">org</del>/<del class=\"diffchange diffchange-inline\">mailman/listinfo/mediawiki-announce MediaWiki release mailing list]</del></div></td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\">Eitan Rubin, <a href="mailto</ins>:<ins class=\"diffchange diffchange-inline\">erubin@bgu</ins>.<ins class=\"diffchange diffchange-inline\">ac</ins>.<ins class=\"diffchange diffchange-inline\">il">erubin@bgu</ins>.<ins class=\"diffchange diffchange-inline\">ac</ins>.<ins class=\"diffchange diffchange-inline\">il<</ins>/<ins class=\"diffchange diffchange-inline\">A></ins></div></td></tr>\n<tr><td colspan=\"2\">\u00a0</td><td class='diff-marker'>+</td><td class='diff-addedline'><div><ins class=\"diffchange diffchange-inline\"><hr></ins></div></td></tr>\n"
}
}